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ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants.

Sex-specific Associations of Gene Expression with Alzheimer's Disease Neuropathology and Ante-mortem Cognitive Performance.

Cell Type Differentiation Using Network Clustering Algorithms.

CASTER-DTA: Equivariant Graph Neural Networks for Predicting Drug-Target Affinity.

CHARMER: detecting and harmonizing high-confidence chromatin interactions across tissues and Hi-C protocols.

TIA1 Mediates Divergent Inflammatory Responses to Tauopathy in Microglia and Macrophages.

Cytokine-induced reprogramming of human macrophages toward Alzheimer's disease-relevant molecular and cellular phenotypes in vitro.

Integrative Network Analysis Reveals Novel Moderators of A?-Tau Interaction in Alzheimer's Disease.

African origin haplotype protective for Alzheimer's disease in APOE?4 carriers: exploring potential mechanisms.

Human-mouse proteomics reveals the shared pathways in Alzheimer's disease and delayed protein turnover in the amyloidome.

Methylation Clocks Do Not Predict Age or Alzheimer's Disease Risk Across Genetically Admixed Individuals.

Comparison of Explainable AI Models for MRI-based Alzheimer's Disease Classification.

gsQTL: Associating genetic risk variants with gene sets by exploiting their shared variability.

Scupa: Single-cell unified polarization assessment of immune cells using the single-cell foundation model.

Amyloid, Tau, and APOE in Alzheimer's Disease: Impact on White Matter Tracts.

BLEND: Probabilistic Cellular Deconvolution with Automated Reference Selection.

Single-nucleus multiomics reveals the disrupted regulatory programs in three brain regions of sporadic early-onset Alzheimer's disease.

Reduced SH3RF3 may protect against Alzheimer's disease by lowering microglial pro-inflammatory responses via modulation of JNK and NFkB signaling.

Sex, racial, and APOE-?4 allele differences in longitudinal white matter microstructure in multiple cohorts of aging and Alzheimer's disease.

Accounting for fast vs slow exchange in single molecule FRET experiments reveals hidden conformational states.

LRRK2 G2019S variant is associated with transcriptional changes in Parkinson's disease human myeloid cells under proinflammatory environment.

Evaluation of enzyme activity predictions for variants of unknown significance in Arylsulfatase A.

Automated Cytometric Gating with Human-Level Performance Using Bivariate Segmentation.

regionalpcs: improved discovery of DNA methylation associations with complex traits.

Network medicine informed multi-omics integration identifies drug targets and repurposable medicines for Amyotrophic Lateral Sclerosis.

An integrative systems-biology approach defines mechanisms of Alzheimer's disease neurodegeneration.

Whole organism snRNA-seq reveals systemic peripheral changes in Alzheimer's Disease fly models.

A transient brain endothelial translatome response to endotoxin is associated with mild cognitive changes post-shock in young mice.

Deep Normative Tractometry for Identifying Joint White Matter Macro- and Micro-structural Abnormalities in Alzheimer's Disease.

QOT: Efficient Computation of Sample Level Distance Matrix from Single-Cell Omics Data through Quantized Optimal Transport.

CHOIR improves significance-based detection of cell types and states from single-cell data.

ER and SOCE Ca2+ signals are not required for directed cell migration in human microglia.

Effects of High Fat Diet on Metabolic Health Vary by Age of Menopause Onset.

Homological landscape of human brain functional sub-circuits.

Metabolomics profiling reveals distinct, sex-specific signatures in the serum and brain metabolomes in the mouse models of Alzheimer's disease.

Proximity labeling reveals dynamic changes in the SQSTM1 protein network.

Inferring a directed acyclic graph of phenotypes from GWAS summary statistics.

Increasing hub disruption parallels dementia severity in autosomal dominant Alzheimer disease.

Large-scale causal discovery using interventional data sheds light on the regulatory network architecture of blood traits.

Effect of altered production and storage of dopamine on development and behavior in C. elegans.

The human microglia responsome: a resource to better understand microglia states in health and disease.

Expansion of highly interferon-responsive T cells in early-onset Alzheimer's disease.

Disrupted excitation-inhibition balance in cognitively normal individuals at risk of Alzheimer's disease.

MidRISH: Unbiased harmonization of rotationally invariant harmonics of the diffusion signal.

A deep neural network estimation of brain age is sensitive to cognitive impairment and decline.

Brain Specific Estrogen Ameliorates Cognitive Effects of Surgical Menopause in Mice.

Improved Protocol for Reproducible Human Cortical Organoids Reveals Early Alterations in Metabolism with MAPT Mutations.

Leveraging longitudinal diffusion MRI data to quantify differences in white matter microstructural decline in normal and abnormal aging.

Harmonization of CSF and imaging biomarkers for Alzheimer's disease biomarkers: need and practical applications for genetics studies and preclinical classification.

A benchmark study on current GWAS models in admixed populations.

CRISPRi-based screens in iAssembloids to elucidate neuron-glia interactions.

Structurally-informed human interactome reveals proteome-wide perturbations by disease mutations.

hipFG: High-throughput harmonization and integration pipeline for functional genomics data.

Accumulation of m6A exhibits stronger correlation with MAPT than ?-amyloid pathology in an APPNL-G-F /MAPTP301S mouse model of Alzheimer's disease.

A BOOTSTRAP MODEL COMPARISON TEST FOR IDENTIFYING GENES WITH CONTEXT-SPECIFIC PATTERNS OF GENETIC REGULATION.

BHLHE40/41 regulate macrophage/microglia responses associated with Alzheimer's disease and other disorders of lipid-rich tissues.

Weakly activated core inflammation pathways were identified as a central signaling mechanism contributing to the chronic neurodegeneration in Alzheimer's disease.

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