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First Author Title Publication Date PMID Referenced Manuscript Intent
Lee S The Impact of Structural Variation on Alzheimer's Disease in the Alzheimer's Disease Sequencing Project. 41646303
Denault WRP fSuSiE enables fine-mapping of QTLs from genome-scale molecular profiles. 40832254
Temple SD Multiple-testing corrections in case-control studies using identity-by-descent segments. 40672175
Durant A Evaluating the association of APOE genotype and cognitive resilience in SuperAgers. 39830268
Venkatesh R Integrative multi-omics approaches identify molecular pathways and improve Alzheimer's Disease risk prediction. 40502591
Cao X Integrative multi-omics QTL colocalization maps regulatory architecture in aging human brain. 40385406
Das A Leveraging functional annotations to map rare variants associated with Alzheimer's disease with gruyere. 39677477
Acosta-Uribe, Juliana Genetic Contributions to Alzheimer's Disease and Frontotemporal Dementia in Admixed Latin American Populations. 40386425
Andrews, Shea J The Role of Genomic-Informed Risk Assessments in Predicting Dementia Outcomes. 38903124
Barnett, Eric J A Novel Method to Disentangle Tightly Linked Risk and Resilience Genes for Brain Disorders: Application to Alzheimer's Disease. 40061341
Cavaillès, Clémence Objective Sleep Quality in Diverse Older Adults: the Importance of Race and Ethnicity and Sex. 40162249
Chattopadhyay, Tamoghna Synthetic Diffusion Tensor Imaging Maps Generated by 2D and 3D Probabilistic Diffusion Models: Evaluation and Applications. 40060678
Cruchaga, Carlos Large-scale Plasma Proteomic Profiling Unveils Novel Diagnostic Biomarkers and Pathways for Alzheimer's Disease. 40166037
Das, Anjali Leveraging functional annotations to map rare variants associated with Alzheimer's disease with gruyere. 39677477
de Paiva Lopes, Katia Gene module-trait network analysis uncovers cell type specific systems and genes relevant to Alzheimer's Disease. 39975342
Dumitrescu, Logan Sex-specific Associations of Gene Expression with Alzheimer's Disease Neuropathology and Ante-mortem Cognitive Performance. 40166028
Eissman, Jaclyn M Genetic Regulation of the Metabolome Differs by Sex, Alzheimer's Disease Stage, and Plasma Biomarker Status. 40061336
Hallab, Asma Chronic emotional stress and mediating role of Interleukine-6 in the association with cardiometabolic disorders in a multiethnic middle-aged and older US-population. 40313284
Hallab, Asma Mediating effect of pro-inflammatory cytokines in the association between depression, anxiety, and cardiometabolic disorders in an ethnically diverse middle-aged and older population. 40321292
Hallab, Asma Mediating role of Interleukin-6 in the predictive association of diabetes with Hippocampus atrophy, Amyloid, Tau, and Neurofilament pathology at pre-clinical stages of diabetes-related cognitive impairment. 40385439
Hallab, Asma Mediating effect of pro-inflammatory cytokines in the association between depression, anxiety, and cardiometabolic disorders in an ethnically diverse community-dwelling middle-aged and older US population. 40321293
Islam, Samia R Vision Transformer Autoencoders for Unsupervised Representation Learning: Capturing Local and Non-Local Features in Brain Imaging to Reveal Genetic Associations. 40196251
Jang, Beomjin SingleBrain: A Meta-Analysis of Single-Nucleus eQTLs Linking Genetic Risk to Brain Disorders. 40093234
Kang, Kaidi The Dynamics of Cognitive Decline towards Alzheimer's Disease Progression: Results from ADSP-PHC's Harmonized Cognitive Composites. 39830238
Kim, Michael E White matter microstructure and macrostructure brain charts across the human lifespan. 40654938
Kuksa, Pavel P BTS: scalable Bayesian Tissue Score for prioritizing GWAS variants and their functional contexts across omics data. 39975395
Lee, Joseph Knowledge-Driven Feature Selection and Engineering for Genotype Data with Large Language Models. 40321944
Li, Bowei Identification and Validation of New Molecular Subtypes within the Early and Late Mild Cognitive Impairment Stages of Alzheimer's Disease. 40475149
Li, Ruowang A One-Shot Lossless Algorithm for Cross-Cohort Learning in Mixed-Outcomes Analysis. 38260403
Lian, Yi D3MI: an efficient and powerful federated imputation method for bias reduction in the analysis of distributed incomplete data by accounting for within-site correlation and between-site heterogeneity. 40385381
Libera, Jenna L Loss of age-associated increase in m6A-modified RNA contributes to GABAergic dysregulation in Alzheimer's disease. 40654675
Liu, Minghua Multi-population Genome-Wide Association Study Identifies Multiple Novel Loci associated with Asymptomatic Intracranial Large Artery Stenosis. 40385396
Liu, Shiwei Multi-Omics Analysis for Identifying Cell-Type-Specific Druggable Targets in Alzheimer's Disease. 39830273
Liu, Shiying Alzheimer disease is (sometimes) highly heritable: Drivers of variation in heritability estimates for binary traits, a systematic review. 40343016
Lorincz-Comi, Noah Combining xQTL and genome-wide association studies from ethnically diverse populations improves druggable gene discovery. 40502754
Lorincz-Comi, Noah Bayesian inference of genetic pleiotropy identifies drug targets and repurposable medicines for human complex diseases. 40166559
Lu, Bin Interpretable MRI-Based Deep Learning for Alzheimer's Risk and Progression. 40385384
Maina, Mahmoud B Somatic and Stem Cell Bank to Study the Contribution of African Ancestry to Dementia: African iPSC Initiative. 39974113
Marderstein, Andrew R Mapping the regulatory effects of common and rare non-coding variants across cellular and developmental contexts in the brain and heart. 40027628
Najar, Carlos F Buen Abad Genetic and functional analysis of unproductive splicing using LeafCutter2. 40291686
Pampari, Anusri ChromBPNet: bias factorized, base-resolution deep learning models of chromatin accessibility reveal cis-regulatory sequence syntax, transcription factor footprints and regulatory variants. 39829783
Patel, Ronak Reduced SH3RF3 may protect against Alzheimer's disease by lowering microglial pro-inflammatory responses via modulation of JNK and NFkB signaling. 38979369
Sant, Cathrine CHOIR improves significance-based detection of cell types and states from single-cell data. 38328105
Seo, Hyomin Cytosine-to-uracil RNA editing is upregulated by pro-inflammatory stimulation of myeloid cells. 40166159
Seto, Mabel Sex-specific Associations of Gene Expression with Alzheimer's Disease Neuropathology and Ante-mortem Cognitive Performance. 39803447
Song, Ziyan Identify Alzheimer's disease subtypes and markers from multi-omic data of human brain and blood with a subspace merging algorithm. 40654912
Su, Xingyu Learning to Discover Regulatory Elements for Gene Expression Prediction. 40034138
Tian, Yuan Leveraging multimodal neuroimaging and GWAS for identifying modality-level causal pathways to Alzheimer's disease. 40093259
Trushin, Sergey Therapeutic assessment of a novel mitochondrial complex I inhibitor in in vitro and in vivo models of Alzheimer's disease. 40027647
Vattathil, Selina M GWAS links APOE to neuropsychiatric symptoms in mild cognitive impairment and dementia. 39974048
Wadsworth, Mark E Sequencing the gaps: dark genomic regions persist in CHM13 despite long-read advances. 40502163
Wang, Ping Heritability of Alzheimer-related plasma biomarkers in the Amish population. 40463532
Yu, Yang TrimNN: Characterizing cellular community motifs for studying multicellular topological organization in complex tissues. 39877090
Zaman, Masihuz Midkine Attenuates A? Fibril Assembly and Amyloid Plaque Formation. 40166321
Abu-Amara, Hasan Region-based analysis with functional annotation identifies genes associated with cognitive function in South Asians from India. 38293024
Abu-Amara, Hasan Region-based analysis with functional annotation identifies genes associated with cognitive function in South Asians from India. 39149469
Acosta-Uribe, Juliana Genetic Contributions to Alzheimer's Disease and Frontotemporal Dementia in Admixed Latin American Populations. 39574875
Anastasi, Federica Polygenic proxies of age-related plasma protein levels reveal TIMP2 role in cognitive performance. 39483923
Arnold, Matthias Individual bioenergetic capacity as a potential source of resilience to Alzheimer's disease. 38313266
Ayele, Biniyam A AD plasma biomarkers are stable for an extended period at -20 degrees C: implications for resource-constrained environments. 39072029
Belloy, Michael E The Role of X Chromosome in Alzheimer's Disease Genetics. 38712163
Bertholim-Nasciben, Luciana African origin haplotype protective for Alzheimer's disease in APOE?4 carriers: exploring potential mechanisms. 39484566
Birkenbihl, Colin Rethinking the residual approach: Leveraging machine learning to operationalize cognitive resilience in Alzheimer's disease. 39228697
Bonham, Luke DNA methylation age from peripheral blood predicts progression to Alzheimer's disease, white matter disease burden, and cortical atrophy. 39574903
Bouland, Gerard A gsQTL: Associating genetic risk variants with gene sets by exploiting their shared variability. 39345521
Brase, Logan Comparative gene regulatory networks modulating APOE expression in microglia and astrocytes. 38699303
Chandio, Bramsh Qamar Amyloid, Tau, and APOE in Alzheimer's Disease: Impact on White Matter Tracts. 39149378
Chattopadhyay, Tamoghna Comparison of Explainable AI Models for MRI-based Alzheimer's Disease Classification. 39345522
Chen, Jiong Automated Cytometric Gating with Human-Level Performance Using Bivariate Segmentation. 38766268
Cheng, Feixiong Single-nucleus multiome analysis of human cerebellum in Alzheimer's disease-related dementia. 39184089
Cheng, Po-Liang A Specialized Reference Panel with Structural Variants Integration for Improving Genotype Imputation in Alzheimer's Disease and Related Dementias (ADRD). 39108532
Ciesielski, Timothy H Country Level Incidence of Alzheimer Disease and Related Dementias is Associated with Increased Omega6 PUFA Consumption. 39148832
Coetzee, Simon G MotifbreakR v2: extended capability and database integration. 39010878
Cole, Simon CHARMER: detecting and harmonizing high-confidence chromatin interactions across tissues and Hi-C protocols. 39651210
Cruchaga, Carlos European and African-specific plasma protein-QTL and metabolite-QTL analyses identify ancestry-specific T2D effector proteins and metabolites. 39108494
Cruchaga, Carlos Multi-cohort cerebrospinal fluid proteomics identifies robust molecular signatures for asymptomatic and symptomatic Alzheimer's disease. 38410465
Cruchaga, Carlos Novel early-onset Alzheimer-associated genes influence risk through dysregulation of glutamate, immune activation, and intracell signaling pathways. 38883718
Cruz-González, Sebastián Methylation Clocks Do Not Predict Age or Alzheimer's Disease Risk Across Genetically Admixed Individuals. 39464059
Debette, Stephanie Proteogenomics in cerebrospinal fluid and plasma reveals new biological fingerprint of cerebral small vessel disease. 39011113
Do, Anh N CSF proteomic profiling with amyloid/tau positivity identifies distinctive sex-different alteration of multiple proteins involved in Alzheimer's disease. 38559166
Dou, Lijun A network-based systems genetics framework identifies pathobiology and drug repurposing in Parkinson's disease. 39483867
Duong-Tran, Duy A principled framework to assess the information-theoretic fitness of brain functional sub-circuits. 38979488
Eulalio, Tiffany regionalpcs: improved discovery of DNA methylation associations with complex traits. 38746367
Fan, Yijun Mapping rare protein-coding variants on multi-organ imaging traits. 39606337
Feng, Yixue Deep Normative Tractometry for Identifying Joint White Matter Macro- and Micro-structural Abnormalities in Alzheimer's Disease. 38370817
Freda, Philip J Assessing the Limitations of Relief-Based Algorithms in Detecting Higher-Order Interactions. 39281873
Gallée, Jeanne Global Perspectives on the Management of Primary Progressive Aphasia. 38562789
Gao, Chenyu Predicting Age from White Matter Diffusivity with Residual Learning. 37986731
Gao, Chenyu Characterizing patterns of diffusion tensor imaging variance in aging brains. 37662348
García-Marín, Luis M Genomic analysis of intracranial and subcortical brain volumes yields polygenic scores accounting for variation across ancestries. 39371125
Garg, Anjali Exploring Cellular Heterogeneity: Single-Cell and Spatial Transcriptomics of Alzheimer Disease Brains and iPSC-Derived Microglia. 39483903
Giorgio, Joseph Variable and interactive effects of Sex, APOE 39149503
Granzotto, Alberto ER and SOCE Ca2+ signals are not required for directed cell migration in human microglia. 38293075
Griswold, Anthony J Generalizability of Tau and Amyloid Plasma Biomarkers in Alzheimer's Disease Cohorts of Diverse Genetic Ancestries. 38645114
Gunasekaran, Tamil Iniyan Missense and Loss of Function Variants at GWAS Loci in Familial Alzheimer's Disease. 38196599
Gunasekaran, Tamil Iniyan Genome-wide scan of Flortaucipir PET levels finds JARID2 associated with cerebral tau deposition. 39417126
Guo, Bohong Efficient multi-phenotype genome-wide analysis identifies genetic associations for unsupervised deep-learning-derived high-dimensional brain imaging phenotypes. 39677479
Gustafson, Jonas A Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation. 38496498
Huang, Penghui BLEND: Probabilistic Cellular Deconvolution with Automated Reference Selection. 39149243
Huang, Shuo Diffusion Model-based FOD Restoration from High Distortion in dMRI. 38947917